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CANCER RESEARCH


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Cancer Genome Project  (CGP Sanger) logo
Category: Cancer research

Mutated genes, somatic mutation, cancer cell lines, copy number analysis, drug sensitivity in cancer cell lines, etc.

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ICRP logo
Category: Cancer research

The International Cancer Research Portfolio (ICRP) is a database of research funded by cancer research organizations throughout the world. The ICRP public web site allows the public at-large to view and browse information about research supported by cancer funding organizations in the United States (US), the United Kingdom (UK) and Canada

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Oncomine Cancer mRNA logo
Category: Cancer research

Oncomine is a bioinformatics initiative aimed at collecting, standardizing, analyzing, and delivering cancer transcriptome data to the biomedical research community.

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Cancer Gene Expression logo
Category: Cancer research

A 'module map' showing conditional activity of microarray expression modules in cancer

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EMICE logo
Category: Cancer research

MMHC the Mouse Models of Human Cancerc Consortium. Precention, diagnosis, and treatment of cancer through preclinical models.

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Mouse Tumor Biology database logo
Category: Cancer research

The Mouse Tumor Biology (MTB) Database supports the use of the mouse as a model system of hereditary cancer providing online access to a variety of information on tumor models, genetic factors, tumor pathology, etc.

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COSMIC logo
Category: Cancer research

COSMIC- Catalogue Of Somatic Mutations In Cancer- is designed to store and display somatic mutation information and related details and contains information relating to human cancers

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P53 Mutations Cancer logo
Category: Cancer research

Reference for all scientist working on p53 or in cancer research in general.

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IARC: p53 Mutations Cancer logo
Category: Cancer research

The IARC TP53 Mutation Database compiles all TP53 gene variations identified in human populations and tumor samples. Data are compiled from the peer-reviewed literature and from generalist databases.

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Connectivity map (cmap) logo
Subcategories: Broad

The Connectivity Map uses computer algorithms and genome-wide expression data to explore the connection between diseases, genes, and drugs. Cmap is a collection of genome-wide transcriptional expression data from cultured human cells treated with bioactive small molecules and simple pattern-matching algorithms that together enable the discovery of functional connections between drugs, genes and diseases through the transitory feature of common gene-expression changes. The aim of theConnectivity

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Provocative Questions logo

The Provocative Questions initiative from NCI asks investigators to propose important but non-obvious questions in cancer research that need attention but would usually find it difficult to get.NCI has issued a request for applications and provisionally set aside US$15 million from the budget for fiscal year 2012 to support the best ideas for answering any of the questions chosen from a list of 24.

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cBio Cancer Genomics Portal logo
Category: Cancer research

The cBio Cancer Genomics Portal provides visualization and analysis for working with data from TCGA and other data sets and provides download of large-scale cancer genomics data sets. You can query this user-friendly portals maintained by the Computational Biology Center at Memorial Sloan-Kettering Cancer Center by entering the name of one or more genes. The output is a list of cancer studies of different tumor types; click on a study, and then on View Cancer Study Details, to call up a graphicâ

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DoCM logo
a database of curated mutations in cancer
Category: Cancer research

DoCM is database of curated mutations in cancer, an open-source, openly licensed resource to enable the cancer research community to aggregate, store, and track biologically important cancer variants with provenance supported by the literature (see Ainscough BY et al., Nat Meth 13:806, 2016)

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ICGC Data Portal logo
Category: Cancer research

The International Cancer Genome Consortium (ICGC) Data Portal allows researchers to access mutation and expression data for specific genes, or to scroll through data sets collected so far on 24 types of cancers by project teams in 9 countries. It represents a good starting point to check for known mutations and other aberrations in a gene of interest.

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SurvExpress logo
Category: Cancer research

SurvExpress is a comprehensive gene expression database and web-based tool providing survival analysis and risk assessment in cancer datasets using a biomarker gene list as input. outcomes. SurvExpress provides survival analysis and risk assessment in cancer datasets using a biomarker gene list as input. The analysis requires only the list of genes and can be performed in approximately one minute per dataset (Aguirre-Gamboa et al, Plos one 8:e74250, 2013).

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UCSC Cancer Genomics Browser logo
Category: Cancer research

The UC Santa Cruz Cancer Genomics Browser is a suite of web-based tools to visualize, integrate and analyze cancer genomics and its associated clinical data. It displays side-by-side heat maps of genomic data such as gene expression and copy number changes, and clinical data for a long list of cancer data sets, along with a feature that enables researchers to look for genomic variations that correlate with clinical outcomes.

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TCGA Data Portal logo
Category: Cancer research

The Cancer Genome Atlas (TCGA) Data Portal provides a platform to retrieve information on somatic mutations, or other data types such as copy number, DNA methylation, and gene expression, for a number of tumor types. It contains clinical information, genomic characterization data, and high-throughput sequencing analysis of the tumor genomes.TCGA updates as soon as new data become available.

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CaSNP logo
Category: Cancer research

CaSNP is a comprehensive collection of copy number alteration (CNA) from SNP arrays.With a user input of region or gene of interest, CaSNP will return the CNA information summarizing the frequencies of gain/loss and averaged copy number for each study, and provide links to download the data or visualize it in UCSC Genome Browser

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Mutation Assessor logo
Category: Cancer research

The server from MSKCC predicts the functional impact (high, medium, low, or neutral) of amino-acid substitutions in proteins, such as mutations discovered in cancer or nonsynonymous polymorphisms. The functional impact is assessed based on evolutionary conservation of the affected amino acid in protein homologs. MutationAssessor looks at conservation across all the homologs of a protein and also it takes into account the conservation within just the closest homologs, which is called “specifici

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Regulome Explorer logo

Regulome Explorer is a set of tools that facilitates the integrative exploration of associations in clinical and molecular TCGA data by providing a wide-ranging view of connections between mutations, expression level changes, and clinical outcomes. The tools were developed by by the Institute for Systems Biology in Seattle, Washington, and MD Anderson Cancer Center at the University of Texas in Houston.

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