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GENE EXPRESSION


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Geo Datasets logo
Category: Gene expression
Subcategories: ncbi

The Gene Expression Omnibus (GEO - NCBI) is a public repository that archives and freely distributes microarray, next-generation sequencing, and other forms of high-throughput functional genomic data submitted by the scientific community. In addition to data storage, a collection of web-based interfaces and applications are available to help users query and download the experiments and gene expression patterns stored in GEO.

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ENCODE logo
Encyclopedia of DNA Elements

A major goal of the Encyclopedia of DNA Elements (ENCODE) is to annotate all functional elements of the human genome including protein-coding genes, pseudogenes, and non-coding transcribed loci and to catalog the products of transcription including splice isoforms and regulatory elements that control the cells and circumstances in which a gene is active.

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WashU Human Epigenome Browser logo
WashU Human Epigenome Browser allows: Epigenome

The browser currently hosts Human Epigenome Atlas data produced by the Roadmap Epigenomics project,but lets users diverge from the strict genome-centric view of the UCSC browser to, for instance, view all genes (or promoters, or 3’ UTRs) in a given pathway side by side. “You can do lots of Google Maps-style operations, and you can look at your data in the context of their metadata.

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USCS Gene Sorter logo
expression, homology and other information on groups of genes
Category: Gene expression

Gene Sorter shows expression, homology and other information on groups of genes that can be related in many ways.

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Geo Profiles logo
Subcategories: ncbi

The Gene Expression Omnibus (GEO - NCBI) is a public repository that archives and freely distributes microarray, next-generation sequencing, and other forms of high-throughput functional genomic data submitted by the scientific community. In addition to data storage, a collection of web-based interfaces and applications are available to help users query and download the experiments and gene expression patterns stored in GEO.

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Mouse Brain Atlas of Gene Expression logo

The Allen Mouse Brain Atlas is a comprehensive genome-wide map of the adult mouse brain revealing where each gene is expressed, or “turned on. A combination of RNA in situ hybridization data, detailed Reference Atlases and informatics analysis tools are integrated to provide a searchable digital atlas of gene expression. Together, these resources present a comprehensive online platform for exploration of the brain at the cellular and molecular level.

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Roadmap Epigenomics Project logo
Roadmap Epigenomics Project allows: Epigenome

The NIH Roadmap Epigenomics Mapping Consortium was launched with the goal of producing a public resource of human epigenomic data to catalyze basic biology and disease-oriented research. The Consortium leverages experimental pipelines built around next-generation sequencing technologies to map DNA methylation, histone modifications, chromatin accessibility and small RNA transcripts in stem cells and primary ex vivo tissues selected to represent the normal counterparts of tissues and organ system

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ArrayMining logo

ArrayMining is a web-server for online automating microarray statistical analysis of gene and protein expression microarray data, designed as a supporting tool for investigation of the genetic components of diseases. By providing feature selection, clustering and prediction analysis, it performs five common gene expression analysis tasks:cross-study normalisation, feature selection, sample clustering, sample classification, network analysis, gene set analysis.

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GTEx logo
Category: Gene expression
GTEx allows: NIH

The Common Fund's Genotype-Tissue Expression (GTEx) program aims to map all sites in the human genome where sequence variation quantitatively affects gene expression and regulation in multiple tissues, providing valuable insights into the mechanisms of gene regulation and its disease-related perturbations.

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NCBI Epigenomics logo
Category: Gene expression

The Epigenomics database at the National Center for Biotechnology Information (NCBI) is a resource that has been created to serve as a comprehensive public resource for whole-genome epigenetic data sets

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Human Mitochondrial Transcriptome logo
Category: Gene expression

The site provides the first comprehensive map of the human mitochondrial transcriptome by near-exhaustive deep sequencing of long and short RNA fractions from purified mitochondria.

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Unigene logo
Category: Gene expression
Subcategories: ncbi

UniGene presents itself as an organized view of the transcriptome. It's an experimental system for automatically partitioning GenBank sequences into a non-redundant set of gene-oriented clusters. Each UniGene cluster contains sequences that represent a unique gene, as well as related information such as the tissue types in which the gene has been expressed and map location.

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FANTOM logo
Category: Gene expression

FANTOM is a large international consortium led by Japanese RIKEN that releases the first comprehensive map of gene activity across the human body. FANTOM5 has been mapping which genes are active in virtually all cell types across the human body, and the regions which determine where the genes are read from the genome. An associated data processing and visualization web system, Zenbu, enables researchers to quickly and easily integrate, visualize and compare large amounts of genomic information r

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COXPRESdb logo
Category: Gene expression

COXPRESdb (coexpressed gene database) represents the coexpression relationship for human, mouse, rat, chicken, zebrafish, fly and nematoda. COXPRESdb can help researchers to clarify the functional and regulatory networks of genes in a broad array of animal species.

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Ovarian Kaleidoscope Database logo
Category: Gene expression

The Ovarian Kaleidoscope Database provides information regarding the biological function, expression pattern and regulation of genes expressed in the ovary. It also contains information on gene sequences, chromosomal localization, human and murine mutation phenotypes and biomedical publication links.

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International Human Epigenome Consortium (IHEC) logo
International Human Epigenome Consortium (IHEC) allows: Epigenome

The International Human Epigenome Consortium (IHEC) is a global consortium with the primary goal of providing free access to high-resolution reference human epigenome maps for normal and disease cell types to the research community.

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