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HOW IMAGE ANALYSIS


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ImageJ logo
ImageJ
Category: Imaging software
ImageJ allows: Image analysis

ImageJ from NIH is the most diffused public domain Java image processing program suitable for several scientific applications. Registration not required.

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BioImageXD logo
BioImageXD
Category: Imaging software
BioImageXD allows: Image analysis, Visualization, 3D

BioImageXD,written in Python and C++, is a free open source software project for analyzing, processing and visualizing of multi dimensional microscopy images.BioImageXD is a multi-purpose post-processing tool for bioimaging. The software can be used for simple visualization of multi-channel temporal image stacks to complex 3D rendering of multiple channels at once. Registration not required.

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CellProfiler & Analyst logo
CellProfiler & Analyst
Category: Imaging software
CellProfiler & Analyst allows: Image analysis

CellProfiler is a free open-source software for high-throughput image-based cell profiling using fluorescence microscopy. It is designed to enable biologists without training in computer vision or programming to quantitatively measure phenotypes from thousands of images automatically. CellProfiler Analyst is free open-source software for exploring and analyzing large, high-dimensional image-derived data. It includes machine learning tools for identifying complex and subtle phenotypes. Registration not required.

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VAA3D logo
VAA3D
Category: Imaging software
VAA3D allows: Visualization, 3D, multidimensional, Image analysis

3D Visualization-Assisted Analysis (Vaa3D) is an open source cross-platform (Mac, Linux, and Windows) tool based on ITK libraries for visualizing large-scale (gigabytes, and 64-bit data) 3D image stacks and various surface data. It is also a container of powerful modules for 3D image analysis (cell segmentation, neuron tracing, brain registration, annotation, quantitative measurement and statistics, etc) and data management. Registration required.

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Icy logo
Icy
Category: Imaging software
Icy allows: Image analysis, Visualization, 3D

Icy is a collaborative bioimage informatics platform that combines a community website for contributing and sharing tools and material, and software with a high-end visual programming framework for seamless development of sophisticated imaging workflows.It offers unique features for behavioral analysis, cell segmentation and cell tracking, Registration not required.

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Fiji logo
Fiji
Category: Imaging software
Fiji allows: Image analysis

Fiji (Fiji is Just ImageJ) is an image processing package based on ImageJ and is currently the tool of choice in analysis of electron- microscopy data.Fiji is effectively an open-source distribution of ImageJ that includes a great variety of organized libraries, plugins relevant for biological research Registration not required.

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