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MODEL ORGANISMS


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HIV DataBase logo
Category: Model organisms
Subcategories: Virus

The HIV databases contain data on HIV genetic sequences, immunological epitopes, drug resistance-associated mutations, and vaccine trials.

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MOPED logo
Protein Expression Database

MOPED analyzes and integrates proteomics studies of human and model organisms. MOPED provides you with a variety of protein information, including expression levels across conditions, tissues and localizations. MOPED also enables you to re-analyze your own experiments and offers links to selected gene, protein, metabolism, and network databases, such as: GeneCards, UniProt, KEGG, and Reactome.

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Genome Channel logo
Category: Model organisms

Microbial genomes (Archaea & Eubacteria) sequenced by the DOE Joint Genome Institute (JGI), analyzed, updated and summarized.

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EcoGene (Escherichia coli DB) logo
Category: Model organisms
Subcategories: escherichia

The EcoGene database contains updated information about the E. coli K-12 genome and proteome sequences, including extensive gene bibliographies. A major EcoGene focus has been the re-evaluation of translation start sites.

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MIPS Saccharomyces Cerevisiae Genome DB logo
Category: Model organisms
Subcategories: Yeast

The MIPS Comprehensive Yeast Genome Database (CYGD) aims to present information on the molecular structure and functional network of the entirely sequenced, well-studied model eukaryote, the budding yeast Saccharomyces cerevisiae

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Wormatlas logo
Category: Model organisms
Subcategories: Worm

A database of behavioral and structural anatomy of Caenorhabditis Elegans

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Arabidopsis Information Resource  (TAIR) logo
Category: Model organisms
Subcategories: Arabidopsis

The Arabidopsis Information Resource (TAIR) maintains a database of genetic and molecular biology data for the model higher plant Arabidopsis thaliana .

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DGRP logo
community resource of common Drosophila sequence polymorphisms
Category: Model organisms
Subcategories: Drosophila

Drosophila melanogaster Genetic Reference Panel (DGRP) is a community resource of common Drosophila sequence polymorphisms (SNPs and indels). It consists of fully sequenced inbred lines derived from a natural population. The DGRP facilitates genotype–phenotype mapping using the power of Drosophila genetics.

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SGD Saccharomyces Genome DB logo
Category: Model organisms
Subcategories: Yeast

SGDTM is a scientific database of the molecular biology and genetics of the yeast Saccharomyces cerevisiae, which is commonly known as baker's or budding yeast.

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Pathogen Genomics logo
Category: Model organisms

Pathogen Genomics aims to sequence the genomes of organisms relevant to human and animal health. We have a large portfolio of projects ranging from bacterial plasmids and phage, through bacterial genomes and protist parasites to helminths and insect vectors. The projects themselves range from EST sequencing through comparative genomic sequencing, to fully finished genomes.

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FlyBase logo
Category: Model organisms
Subcategories: Drosophila

A Database of Drosophila Genes & Genomes

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ZFIN logo
Zebrafish Model Organism Database
Category: Model organisms
Subcategories: Zebrafish

The Zebrafish Model Organism Database

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AGRIS Arabidopsis logo
Category: Model organisms
Subcategories: arabidopsis

The Arabidopsis Gene Regulatory Information Server (AGRIS) is an information resource of Arabidopsis promoter sequences, transcription factors and their target genes. AGRIS provides a comprehensive resource for gene regulatory studies in the model plant Arabidopsis thalian through the access to three interlinked databases, AtTFDB, AtcisDB and AtRegNet.

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WormBase logo
Category: Model organisms
Subcategories: Worm

WormBase is the repository of mapping, sequencing and phenotypic information for C. elegans (and some other nematodes). The worm informatics group at the Sanger Institute play a key role in assembling the whole database (a new release occurs every three weeks).

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Berkeley Drosophila Genome Project logo
Category: Model organisms
Subcategories: Drosophila

The Berkeley Drosophila Genome Project (BDGP) is a consortium of the Drosophila Genome Center whose goals are are to finish the sequence of the euchromatic genome of Drosophila melanogaster to high quality and to generate and maintain biological annotations of this sequence.

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Comprehensive Microbial Resource (CMR) logo
Category: Model organisms

The Comprehensive Microbial Resource (CMR) is a free website used to display information on all of the publicly available, complete prokaryotic genomes.

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modENCODE logo
Category: Model organisms
Subcategories: Worm , Drosophila

The National Human Genome Research Institute (NHGRI) model organism ENCyclopedia Of DNA Elements (modENCODE) Project will try to identify all of the sequence-based functional elements and the genome-wide patterns of regulatory interactions in the Caenorhabditis elegans and Drosophila melanogaster genome.

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YMDB logo
Yeast Metabolome Database
Category: Model organisms
Subcategories: Yeast

The Yeast Metabolome Database (YMDB) is a manually curated database of small molecule metabolites found in or produced by Saccharomyces cerevisiae. This database covers metabolites described in textbooks, scientific journals, metabolic reconstructions and other electronic databases.

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