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Nature Jobs logo
Subcategories: Jobs

Naturejobs is in association with Nature magazine. It is a worldwide career resource for scientists, providing a wide range of career advice and information. Registration not required.

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Published on 2012-04-29 05:28:03
ArrayExpress Archive logo
Subcategories: EMBL

The ArrayExpress Archive (EMBL-EBI) is a database of functional genomics experiments including gene expression where you can query and download data collected to MIAME and MINSEQE standards. Registration not required.

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Published on 2012-04-29 05:25:54
Babelomics4 logo

Babelomics is an integrative platform for the analysis of transcriptomics, proteomics and genomic data with advanced functional profiling. This new version of Babelomics integrates primary (normalization, calls, etc.) and secondary (signatures, predictors, associations, TDTs, clustering, etc.) analysis tools within an environment that allows relating genomic data and/or interpreting them by means of different functional enrichment or gene set methods. Such interpretation is made not only using functional definitions (GO, KEGG, Biocarta, etc.) but also regulatory information (from Transfac, Jaspar, etc.) and other levels of regulation such as miRNA-mediated interference, protein-protein interactions, text-mining module definitions and the possibility of producing de novo annotations through the Blast2GO system . Registration not required.

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Published on 2012-04-29 05:25:01
AbMiner logo
commercially available antibodies for research purposes
Subcategories: Antibodies

AbMiner (NIH) is a tool that allows users to search for appropriate, commercially available antibodies for research purposes, and to match each antibody to its respective genomic identifiers. The unique feature of this anitibody collection is that all antibodies are screened by Western blot and the results are provided in AbMiner. The sample used for antibody screening was a pool of the NCI-60 cancer cell lines, comprised of 60 different cell lines from 9 different tissues of origin (more info?). Besides results, AbMiner also includes the diluitons used and pertinent vendor information for all antibodies. The target antigen for each antibody was translated to the encoding gene symbol using MatchMiner. Other identifiers include gene name, HUGO status, UniGene Cluster ID, RefSeq for protein and mRNA, and Entrez Gene Ids. We will update these identifiers periodically as new information becomes available. Users can search AbMIner by any of the identifiers and easily navigate between antibody, protein, mRNA, and gene. Registration not required.

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Published on 2012-04-29 00:33:34
Antibody Resource logo
Subcategories: Antibodies

The Antibody Resource Page is a guide designed by scientists for scientists to find companies that sell custom monoclonal, polyclonal, and catalogue antibodies. Registration not required.

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Published on 2012-04-29 00:32:13
Antibodies Data Portal (NCI) logo
Subcategories: Antibodies

Access to high quality, well characterized, affordable affinity reagents has been deemed a major hurdle in cancer research by representatives of the scientific community. The reagents program within CPTC provides tools, reagents, technologies, and reference materials to allow for peptide and protein analysis for a variety of platforms and applications. The reagents generated within the CPTC program include cancer-related monoclonal antibodies and hybridomas, reference materials, standards kits and MRM peptides. Registration not required.

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Published on 2012-04-29 00:31:28
Labome logo
Subcategories: Antibodies

Search antibodies, siRNA/shRNA, ELISA, cDNA clones, proteins/peptides, microRNA, and biochemicals from all suppliers Registration not required.

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Published on 2012-04-29 00:29:10
Labx logo

LabX has evolved as a highly specialized business-to-business marketplace where scientific equipment and supplies can be bought and sold. It provide a means for buyers and sellers to connect. Professionals from all industries visit LabX to buy and sell equipment and supplies. While 85% of customers are from North America, LabX enjoys a worldwide user base that includes Europe, Asia, Central and South America, and Australia. Registration not required.

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Published on 2012-04-29 00:27:08
R logo
The R Project for Statistical Computing

R is a free software environment for statistical computing and graphics. It compiles and runs on a wide variety of UNIX platforms, Windows and MacOS Registration not required.

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Published on 2012-04-28 15:08:44
Geo Datasets logo
Category: Gene expression
Subcategories: NCBI

The Gene Expression Omnibus (GEO - NCBI) is a public repository archiving and freely distributing microarray, next-generation sequencing, and other forms of high-throughput functional genomic data submitted by the scientific community. In addition to data storage, a collection of web-based interfaces and applications are available to help users query and download the experiments and gene expression patterns stored in GEO. Registration not required.

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Published on 2012-04-28 15:07:20
WikiPathways logo
Category: Pathways

WikiPathways is an open, public platform dedicated to the curation of biological pathways by and for the scientific community Registration not required.

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Published on 2012-04-28 10:15:07
BASE logo

BASE is a comprehensive free web-based database solution for the massive amounts of data generated by microarray analysis. Registration not required.

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Published on 2012-04-28 10:12:21
Human Metabolome Database logo

The Human Metabolome Database (HMDB) is a freely available electronic database containing detailed information about small molecule metabolites found in the human body. It is intended to be used for applications in metabolomics, clinical chemistry, biomarker discovery and general education. Registration not required.

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Published on 2012-04-28 10:11:06
NCBI Gene logo
Subcategories: ncbi

Gene (NCBI) is a searchable database of genes, from RefSeq genomes, and defined by sequence and/or located in the NCBI Map Viewer Registration not required.

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Published on 2012-04-28 10:03:06
DiRE logo
analysis of transcription factor binding sites
Subcategories: NCBI

DiRE (Distant Regulatory Elements of co-regulated genes) uses gene co-expression data, comparative genomics, and combinatorics of transcription factor binding sites (TFBSs) to find TFBS-association signatures that can be used for discriminating specific regulatory functions. DiRE's unique feature is the detection of REs outside of proximal promoter regions, as it takes advantage of the full gene locus to conduct the search. DiRE can predict common REs for any set of input genes for which the user has prior knowledge of co-expression, co-function, or other biologically meaningful grouping. The server predicts function-specific REs consisting of clusters of specifically-associated TFBSs, and it also scores the association of individual TFs with the biological function shared by the group of input genes. Its integration with the Array2BIO server allows users to start their analysis with raw microarray expression data. Registration not required.

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Published on 2012-04-28 10:00:27
Integrative Genomics Viewer (IGV) logo

The Integrated Genomics Viewer (IGV) is a high-performance visualization tool for interactive exploration of large, integrated datasets. It supports a wide variety of data types including sequence alignments, microarrays, and genomic annotations. Registration required.

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Published on 2012-04-24 12:20:47
Roadmap Epigenomics Project logo
Roadmap Epigenomics Project allows: Epigenome

The NIH Roadmap Epigenomics Mapping Consortium was launched with the goal of producing a public resource of human epigenomic data to catalyze basic biology and disease-oriented research. The Consortium leverages experimental pipelines built around next-generation sequencing technologies to map DNA methylation, histone modifications, chromatin accessibility and small RNA transcripts in stem cells and primary ex vivo tissues selected to represent the normal counterparts of tissues and organ systems frequently involved in human disease. Registration not required.

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Published on 2012-04-13 04:45:47
UCSC -Xena logo
Cancer Genomics Browser
Category: Cancer research

The UC Santa Cruz Xena (Cancer Genomics Browser) is a suite of web-based tools to visualize, integrate and analyze cancer genomics and its associated clinical data. It displays side-by-side heat maps of genomic data such as gene expression and copy number changes, and clinical data for a long list of cancer data sets, along with a feature that enables researchers to look for genomic variations that correlate with clinical outcomes. Registration not required.

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Published on 2012-04-12 10:02:38
Regulome Explorer logo
From Institute of Systems Biology

Regulome Explorer is a set of tools that facilitates the integrative exploration of associations in clinical and molecular TCGA data by providing a wide-ranging view of connections between mutations, expression level changes, and clinical outcomes. The tools were developed by by the Institute for Systems Biology in Seattle, Washington, and MD Anderson Cancer Center at the University of Texas in Houston. Registration not required.

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Published on 2012-04-12 09:59:04
TCGA Data Portal logo
Category: Cancer research

The Cancer Genome Atlas (TCGA) Data Portal provides a platform to retrieve information on somatic mutations, or other data types such as copy number, DNA methylation, and gene expression, for a number of tumor types. It contains clinical information, genomic characterization data, and high-throughput sequencing analysis of the tumor genomes.TCGA updates as soon as new data become available. Registration not required.

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Published on 2012-04-12 09:12:22
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