NOVELTIES
The Probes & Drugs aggregates publicly available information to help researchers select which chemicals to use. This portal is a public resource joining together focused libraries of bioactive compounds (probes, drugs, specific inhibitor sets etc.) with commercially available screening libraries. The purpose of the portal is to reflect the current state of bioactive compound space and to enable its exploration from different points of view. Registration not required.
Click here for more informationsPublished on 2017-09-04 10:32:44
EBImage provides general purpose functionality for high-throughput image processing and analysis in fluorescence microscopy. In the context of microscopy-based cellular assays, EBImage offers tools to segment cells and extract quantitative cellular descriptors. This allows the automation of such tasks using the R programming language and facilitates the use of other tools in the R environment for signal processing, statistical modeling, machine learning and visualization with image data (Paut et al., Bioinformatics 26, 979–981, 2010) Registration not required.
Click here for more informationsPublished on 2017-09-04 10:10:02
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a comprehensive collection of experimental protocols
Category: Biomedical protocols
The www.bio-protocol.org (originally from Stanford Univerisity) aims to provide life science researchers with a comprehensive collection of experimental protocols free of charge. Each protocol published on the website bears high standards in quality and provides accurate and detailed guidance which allows even rookie researchers to easily repeat experiments. Contribution to www.bio-protocol.org is by invitation only to maintain the quality of the protocols. The invitations are issued by their editorial board to experts from elite universities and research institutions. The invited authors can only contribute protocols that he or she has personally carried out with success. Registration not required.
Click here for more informationsPublished on 2017-07-25 15:30:38
A major goal of the Encyclopedia of DNA Elements (ENCODE) is to annotate all functional elements of the human genome including protein-coding genes, pseudogenes, and non-coding transcribed loci and to catalog the products of transcription including splice isoforms and regulatory elements that control the cells and circumstances in which a gene is active. Registration not required.
Click here for more informationsPublished on 2017-07-20 09:59:08
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free online tool free plagiarism detection
Category: Plagiarism Detection
Dupli Checker allows: check for plagiarism
Dupli Checker is one of the most effective free plagiarism detection tools on the Internet. While it doesn’t have a fancy interface, it certainly gets the job done well. You don’t have to pay anything. Whether you are a one-time user or plan to make the most of this free plagiarism detection tool on a daily basis, you are not required to pay for subscription. You are presented with a very basic, functional layout that does not require for any previous experience with plagiarism detection tools. Duplichecker enables you to either copy and paste your text in the field and then check it for plagiarisms, or upload a Docx or Text file from your computer. If you sign up for free, Duplichecker allows you to do 50 plagiarism checks in a single day. If you choose not to indulge in a free sign-up then you are limited to only 1 plagiarism check per day. Registration not required.
Click here for more informationsPublished on 2017-07-13 00:52:16
Plagiarism destroys your career life. Plagiarisma is the plagiarism checker considered as an important tool for students, teachers, scholars and professional writers. It works on Windows, Android, BlackBerry and Web. It detects copyright infringement in your essay, research paper, coursework or dissertation. It supports Google, Yahoo, Scholar and Books. It helps avoid plagerism. It will only take a few minutes to check your document. Are you searching for plagarism detector that is accurate enough to help you track duplicate content? Avoid duplicate content - use Plagiarisma free paraphrasing software! Registration not required.
Click here for more informationsPublished on 2017-07-13 00:40:14
PubCrawler is a free alerting service that scans daily updates to the NCBI Medline (PubMed) and GenBank databases. PubCrawler helps keeping scientists informed of the current contents of Medline and GenBank, by listing new database entries that match their research interests. Registration required.
Click here for more informationsPublished on 2017-04-26 07:43:45
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connect with researchers, make your work visible and stay current
Category: Biomedical communities
Researchgate allows: connect with researchers, make your scientific work visible
ResearchGate is a network dedicated to science and research. Connect, collaborate and discover scientific publications, jobs and conferences. All for free. Registration required.
Click here for more informationsPublished on 2017-03-12 13:07:12
The Expression Atlas provides information on gene expression patterns under different biological conditions such as a gene knock out, a plant treated with a compound, or in a particular organism part or cell. It includes both microarray and RNA-seq data. The data is re-analysed in-house to detect interesting expression patterns under the conditions of the original experiment. There are two components to the Expression Atlas, the Baseline Atlas and the Differential Atlas. The Baseline Atlas displays information about which gene products are present (and at what abundance) in normal conditions (e.g. tissue, cell type). The Differential Atlas allows users to identify genes that are up- or down-regulated in a wide variety of different experimental conditions such as yeast mutants, cadmium treated plants, cystic fibrosis or the effect on gene expression of mind-body practice. Registration not required.
Click here for more informationsPublished on 2017-03-04 10:42:47
GEO is a public functional genomics data repository supporting MIAME-compliant data submissions. Array- and sequence-based data are accepted. Tools are provided to help users query and download experiments and curated gene expression profiles. Registration not required.
Click here for more informationsPublished on 2017-03-04 10:34:38
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Empowering the Development of Genomics Expertise
Category: DNA sequencing, Sequencing and assembly software
EDGE bioinformatics is intended to help truly democratize the use of Next Generation Sequencing for exploring genomes and metagenomes. Given that bioinformatic analysis is now the rate limiting factor in genomics, we developed EDGE bioinformatics with a user-friendly interface that allows scientists to perform a number of tailored analyses using many cutting-edge tools. Users can explore those and other data sets using a free demo hosted on the LANL server. Researchers who wish to analyse their own sequences must install the software on their own systems (see JM Perkel, Nature 543:137, 2017) Registration required.
Click here for more informationsPublished on 2017-03-02 11:27:37
Codeacademy is an online interactive platform for those who want to learn programming on their own. It offers free classes on 12 different programming languages including Python, Java, PHP, JavaScript (jQuery, AngularJS, React.js), Ruby, SQL, and Sass, as well as markup languages HTML and CSSIt. Codeacademy is a tutorial that mainly teaches you the syntax of a programming language. Registration required.
Click here for more informationsPublished on 2017-01-29 05:08:10
This web tool allows you to assemble a set of contiguous sequences (contigs) Registration not required.
Click here for more informationsPublished on 2016-11-04 09:27:45
KEGG DRUG is a unified drug information resource that contains chemical structures and/or chemical components of all prescription and OTC drugs in Japan, most prescription drugs in the USA, and many prescription drugs in Europe. Thus, all the marketed drugs in Japan are fully represented in KEGG DRUG and linked to the package insert information (labels information). These include crude drugs and TCM (Tradictional Chinese Medicine) drugs, which are very popular in Japan and some of which are specified in the Japanese Pharmacopoeia. Each KEGG DRUG entry is identified by the D number distinguishing the chemical structure of chemicals or the chemical component of mixtures and crude drugs. It is associated with generic names and trade names, as well as efficacy as part of the BRITE functional hierarchies (ontologies), target information as a context of KEGG pathways, and information about the history of drug development represented as a KEGG DRUG structure map. Registration not required.
Click here for more informationsPublished on 2016-10-23 14:47:22
DoCM is database of curated mutations in cancer, an open-source, openly licensed resource to enable the cancer research community to aggregate, store, and track biologically important cancer variants with provenance supported by the literature (see Ainscough BY et al., Nat Meth 13:806, 2016) Registration not required.
Click here for more informationsPublished on 2016-09-30 02:59:31
Mendeley is a free reference manager and an academic social network. Manage your research, showcase your work, connect and collaborate with over five million researchers worldwide (ref Singh J, J Pharmacol Pharmacother 2010 Jan;1(1):62-3) Registration required.
Click here for more informationsPublished on 2016-09-09 08:05:19
The SRMAtlas is a compendium of targeted proteomics assays to detect and quantify proteins in complex proteome digests by mass spectrometry. It results from high-quality measurements of natural and synthetic peptides conducted on a triple quadrupole mass spectrometer, and is intended as a resource for selected/multiple reaction monitoring (SRM/MRM)-based proteomic workflows (See Kusebauch, U. et al., Cell 166: 766, 2016; Doerr A, Nature Meth 13:712, 2016) Registration not required.
Click here for more informationsPublished on 2016-08-30 11:47:35
The Exomiser is a Java applicationthat that finds potential disease-causing variants from whole-exome or whole-genome sequencing data. It is an opensource Java software package that can be downloaded and run on a single desktop computer. It filters and prioritizes candidate genes and variants from whole-exome or wholegenome sequencing data, with a special focus on phenotypic data. Users enter a patient’s clinical features and exome into the program, and Exomiser generates a scored list of candidate variants based on how frequently a variant occurs in the broader population; the type of mutation and how disruptive it may be; and potentially related genes, which may be implicated in a particular disease or clinical feature.(Smedley et al., Nature Protocols 10:2004, 2015). Registration not required.
Click here for more informationsPublished on 2016-08-18 10:44:43
Galaxy is an open source, web-based platform for data intensive biomedical research whose purpose is to make complex analysis more accessible. It is a useful tool for bioinformaticians and DNA sequencers. Galaxy provides a point-and-click web interface alternative to the bioinformatics command line, thus allowing researchers to easily create, run, and troubleshoot analytical pipelines (see Perkel JM, The Scientist 08/2016, p 57). Registration required.
Click here for more informationsPublished on 2016-08-03 07:39:26
The Gene Expression Omnibus (GEO - NCBI) is a public repository that archives and freely distributes microarray, next-generation sequencing, and other forms of high-throughput functional genomic data submitted by the scientific community. In addition to data storage, a collection of web-based interfaces and applications are available to help users query and download the experiments and gene expression patterns stored in GEO. Registration not required.
Click here for more informationsPublished on 2016-04-20 13:46:31
Biomedical search tools
Online genomic tools
Online proteomics tools
Calculators
Biomedical lab tools
Scientific writing/reading
Biomedical communities
Biomedical funding and jobs
Medical topics
Biomedical softwares