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PROTEIN INFORMATIONS


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UniProt logo

The mission of UniProt is to provide the scientific community with a comprehensive, high quality and freely accessible resource of protein sequence and functional information. The site provides UniProtKB (protein knowledgebase) consisting of Swiss-Prot and TrEMBL sections; UniRef that speeds up sequence similarities search; and UniParc a squence archive.

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ExPASy Proteomics Server logo

The ExPASy (Expert Protein Analysis System) proteomics server of the Swiss Institute of Bioinformatics (SIB) is dedicated to the analysis of protein sequences and structures as well as 2-D PAGE

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Human Protein Atlas logo
expression and localization of proteins in human tissues

The human protein atlas shows expression and localization of proteins in a large variety of normal human tissues, cancer cells and cell lines with the aid of immunohistochemistry (IHC) images and immunofluorescence (IF) confocal microscopy images (Marx V., Nature 509:645, 2014).

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DIP: Interacting Proteins DB logo

The DIP database catalogs experimentally determined interactions between proteins. It combines information from a variety of sources to create a single, consistent set of protein-protein interactions.

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LOCATE: subcellular protein localization logo

LOCATE is a curated database that houses data describing the membrane organization and subcellular localization of proteins from the RIKEN FANTOM4 mouse and human protein sequence set.

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Binding DB logo

BindingDB is a public, web-accessible database of measured binding affinities, focusing chiefly on the interactions of protein considered to be drug-targets with small, drug-like molecules.

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NCBI protein logo
Subcategories: ncbi

The Protein database is a collection of sequences from several sources, including translations from annotated coding regions in GenBank, RefSeq and TPA, as well as records from SwissProt, PIR, PRF, and PDB. Protein sequences are the fundamental determinants of biological structure and function.

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STITCH logo
Subcategories: EMBL

STITCH is a resource to explore known and predicted interactions of chemicals and proteins. Chemicals are linked to other chemicals and proteins by evidence derived from experiments, databases and the literature.

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MAPU logo

MAPU is the Max-Planck Unified Proteome DB. Mass spectrometry (MS)-based proteomics on body fluids, cell lines, red blood cells, liver. MAPU datasets can serve as reference proteomes in biomarker discovery.

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Cytokine Family Database (dbCFC) logo

The Cytokine Family Database (dbCFC) is a collection of cDNA, gene and protein records of cytokines deposited in public databases. It provides various information about the cytokine members of vertebrates in other databases

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Human Protein Reference Database logo

The Human Protein Reference Database represents a centralized platform to visually depict and integrate information pertaining to domain architecture, post-translational modifications, interaction networks and disease association for each protein in the human proteome.

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Biozon logo

Biozon is a unified biological resource on DNA sequences, proteins, complexes and cellular pathways. The Biozon database relies on an extensive database schema that integrates information at the macro-molecular level as well as at the cellular level, from a variety of resources to create a unified biological knowledge resource with emphasis on protein and DNA characterization and classification.

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Bioinformatic Harvester IV logo

Harvester is a bioinformatic meta search engine that crawls and crosslinks the following bioinformatic sites: 4DXp - AceView - BLAST - BLINK - Biocompare - CDART - CDD - EB-eye - ensEMBL - Entrez - FishMap - Galaxy - GeneSorter - UCSC GenomeBrowser - gfp-cDNA - Google-Scholar - gopubmed - Harvester42 - H-Inv - HomoloGene - iHOP - IPI - LOCATE - MapView - MGI - MINT - Mitocheck - OMIM - PolyMeta - Proteinatlas - PSORT II - RGD - SMART - SOSUI - STITCH - STRING - TAIR - Unigene - UniprotKB - Wikip

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EBI logo
EMBL European Bioinformatic Istitute
Subcategories: EMBL

EBI (EMBL European Bioinformatic Istitute) home page provides a central access point to search several databases for information on genes, proteins, enzymes etc.

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SPD: secreted protein database logo

SPD is a collection of secreted proteins from Human, Mouse and Rat proteomes, which includes sequences from SwissProt, Trembl, Ensembl and Refseq. Include a downloadable database.

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PRIDE logo
PRoteomics IDEntifications database
Subcategories: EMBL

PRIDE (PRoteomics IDEntifications database) is a centralized, standards compliant, public data repository for proteomics data. It provides a public repository for protein and peptide identifications together with the evidence supporting these identifications. PRIDE is also able to capture details of post-translational modifications coordinated relative to the peptides in which they have been found.

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PANTHER: Classification System logo

The PANTHER (Protein ANalysis THrough Evolutionary Relationships) Classification System is a unique resource that classifies genes by their functions, using published scientific experimental evidence and evolutionary relationships to predict function even in the absence of direct experimental evidence.

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Enzyme Info Brenda logo

The Comprehensive Enzyme Information System

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PDBsum: Protein 3D dabase logo
Subcategories: EMBL

PDBsum provides an at-a-glance overview of every macromolecular structure deposited in the Protein Data Bank (PDB), giving schematic diagrams of the molecules in each structure and of the interactions between them.

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GelBank: protein gel image repository logo

GelBank is a public archive for gel images annotated or prepared by GelScape (or any software tool that generates image-mapped gel images). It is a fully searchable web-enabled gel image databank which adheres to the general guidelines suggested for federated gel databases

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