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Protein Structure Database
AlphaFold allows: Visualize protein structure
There are 214,684,311 structures available on the AlphaFold DB website, including 48 complete proteomes available for bulk download.
...continue to readBindingDB is a public, web-accessible database of measured binding affinities, focusing chiefly on the interactions of protein considered to be drug-targets with small, drug-like molecules.
...continue to readChEMBL, an open-access database, contains more than 5 million interactions between proteins and ligands that have been published in peer-reviewed journals or reported by laboratories and screening centers . Under ChEMBL’s “Ligand Search” tab, you can enter a compound’s SMILES notation in the “List Search” box and click “Fetch Compounds.” On the next page, clicking on the ChEMBL compound identifier under the 2-D drawing takes you to the Compound Report Card page, which includes th
...continue to readThe DIP database catalogs experimentally determined interactions between proteins. It combines information from a variety of sources to create a single, consistent set of protein-protein interactions.
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EMBL European Bioinformatic Istitute
Category: Gene information search, Protein informations
Subcategories: EMBL
EBI (EMBL European Bioinformatic Istitute) home page provides a central access point to search several databases for information on genes, proteins, enzymes etc.
...continue to readThe Comprehensive Enzyme Information System
...continue to readExPASy is the Swiss Institute of Bioinformatics (SIB)Bioinformatics Resource Portal which provides access to scientific databases and software tools (i.e., resources) in different areas of life sciences including proteomics, genomics, phylogeny, systems biology, population genetics, transcriptomics etc. (see Categories in the left menu). On this portal you find resources from many different SIB groups as well as external institutions.
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Protein gel image repository
Category: Protein informations
GelBank is a public archive for gel images annotated or prepared by GelScape (or any software tool that generates image-mapped gel images). It is a fully searchable web-enabled gel image databank which adheres to the general guidelines suggested for federated gel databases
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expression and localization of proteins in human tissues
Category: Protein informations
The human protein atlas shows expression and localization of proteins in a large variety of normal human tissues, cancer cells and cell lines with the aid of immunohistochemistry (IHC) images and immunofluorescence (IF) confocal microscopy images (Marx V., Nature 509:645, 2014).
...continue to readMAPU is the Max-Planck Unified Proteome DB. Mass spectrometry (MS)-based proteomics on body fluids, cell lines, red blood cells, liver. MAPU datasets can serve as reference proteomes in biomarker discovery.
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Peptidase Database
Category: Protein informations
Subcategories: EMBL
The MEROPS database is an information resource for peptidases (also termed proteases, proteinases and proteolytic enzymes) and the proteins that inhibit them.
...continue to readThe Protein database is a collection of sequences from several sources, including translations from annotated coding regions in GenBank, RefSeq and TPA, as well as records from SwissProt, PIR, PRF, and PDB. Protein sequences are the fundamental determinants of biological structure and function.
...continue to readA protein knowledge-base. It includes entries on more than 20,000 proteins and nearly 200,000 posttranslational modifications.
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Geneontology
Category: Protein informations, Gene information search