I2D (Interologous Interaction Database) is a web application designed to explore known and predicted protein-protein interactions and to facilitate bioinformatics initiatives exploring protein interaction networks.
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protein-protein interactions mined from the scientific literature
Category: Protein interactions
The Molecular INTeraction database (MINT) focuses on experimentally verified protein-protein interactions mined from the scientific literature by expert curators. The full MINT dataset can be freely downloaded.
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known and predicted protein interactions
Category: Protein interactions
STRING allows: database of known protein interactions, predict protein interactions
STRING is a database of known and predicted protein interactions. The interactions include direct (physical) and indirect (functional) associations. They are derived from Genomic Context, High-throughput Experiments (Conserved), Coexpression, Previous Knowledge. STRING quantitatively integrates interaction data from these sources for a large number of organisms, and transfers information between these organisms where applicable. The database currently covers 2,590,259 proteins from 630 organ
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BindingDB is a public, web-accessible database of measured binding affinities, focusing chiefly on the interactions of protein considered to be drug-targets with small, drug-like molecules.
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The DIP database catalogs experimentally determined interactions between proteins. It combines information from a variety of sources to create a single, consistent set of protein-protein interactions.
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The Biological General Repository for Interaction Datasets (BioGRID) is a public database that archives and disseminates genetic and protein interaction data from model organisms and humans
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STITCH is a resource to explore known and predicted interactions of chemicals and proteins. Chemicals are linked to other chemicals and proteins by evidence derived from experiments, databases and the literature.
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