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ICRP logo
Internationa Cancer Partenship
Category: Cancer research

Established in 2000, International Cancer Research Partnership (ICRP) is a unique alliance of cancer organizations working together to enhance global collaboration and strategic coordination of research. Registration not required.

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SCAN2 logo
Category: DNA alignment

SCAN2 is a we app for aligning two multimegabyte-size genome sequences Registration not required.

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PipeAlign logo

PipeAlign2 is a protein family analysis tool integrating a multi-step process ranging from the search for sequence homologues in protein and 3D structure databases to the structural / functional annotation of the family. The complete, automatic pipeline takes a single sequence or a set of sequences as input and constructs a high-quality, validated multiple sequence alignment (MSA) in which sequences are clustered into potential functional subgroups. Registration not required.

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PS: Power and Sample Size Calculation logo

PS is an interactive Windows program from Vanderbilt University for performing power and sample size calculations. It can be used for studies with dichotomous, continuous, or survival response measures. Registration not required.

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Overlapping Primers logo

Overlapping Primers interacts with the Whitehead's Primer3 progra to create multiple overlapping PCR products in one sequence. Registration not required.

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COmics logo
Computational Omics Lab

Various stand alone software for proteomics and genomics. Registration not required.

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Broad Bioimage Benchmark Collection logo
Broad Bioimage Benchmark Collection allows: Image database, Broad

The Broad Bioimage Benchmark Collection (BBBC) is a collection of freely downloadable microscopy image sets intended as a resource for testing and validating automated image-analysis algorithms. In addition to the images themselves, each set includes a description of the biological application and some type of ground truth. Registration not required.

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multi-zPicture logo
Category: DNA alignment
Subcategories: NCBI

zPicture is a dynamic alignment and visualization tool that is based on blastz alignment program utilized by PipMaker. zPicture alignments can be automatically submitted to rVista 2.0 to identify conserved transcription factor binding sites. Registration not required.

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Reverse Translate logo

TReverse Translate accepts a protein sequence as input and uses a codon usage table to generate a DNA sequence representing the most likely non-degenerate coding sequence. A consensus sequence derived from all the possible codons for each amino acid is also returned. Use Reverse Translate when designing PCR primers to anneal to an unsequenced coding sequence from a related species Registration not required.

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Digital Dutch logo

Multiuse converter for units on: Angle, Area, Bits, Density, Electric, Energy, Focrce, Fuel, Length, Mass, Power, Pressure, Speed, Temperature, Time, Volume Registration not required.

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Abbreviations logo

Browse the Web's Largest Acronyms & Abbreviations Resource Registration not required.

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SNP Primers logo

designs primers around every SNP in a GenBank file. Registration not required.

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Agency for Healthcare Research and Quality logo

AHRQ, a web site of the US Dept Of Human Services, provides several funding opportunities in healthcare for US. Registration not required.

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ESPript logo
Category: DNA alignment

ESPript, 'Easy Sequencing in PostScript', is a program which renders sequence similarities and secondary structure information from aligned sequences for analysis and publication purpose. Registration not required.

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JDotter logo

Java Dot Plot Alignments (JDotter) is a platform-independent Java interactive interface for the Linux version of Dotter, a widely used program for generating dotplots of large DNA or protein sequences. JDotter runs as a client-server application and can send new sequences to the Dotter program for alignment as well as rapidly access a repository of preprocessed dotplots. JDotter also interfaces with a sequence database or file system to display supplementary feature data. Thus, JDotter greatly simplifies access to dotplot data in laboratories that deal with large numbers of genomes and have a multi-platform organization. Registration not required.

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Cancer Gene Expression logo
Category: Cancer research

A 'module map' showing conditional activity of microarray expression modules in cancer Registration not required.

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STRING logo
known and predicted protein interactions

STRING is a database of known and predicted protein interactions. The interactions include direct (physical) and indirect (functional) associations. They are derived from Genomic Context, High-throughput Experiments (Conserved), Coexpression, Previous Knowledge. STRING quantitatively integrates interaction data from these sources for a large number of organisms, and transfers information between these organisms where applicable. The database currently covers 2,590,259 proteins from 630 organisms. Registration not required.

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RxC Contingency Tables (including gamma & others) logo

RxC table concerns a basic two dimensional crosstable procedure. The statistical tests include Chi-squares, Gamma, Tau, Lambda, Kappa/Bowker. Formatting table and graphs are allowed. Registration not required.

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ScienceJobs logo
Subcategories: Jobs

ScienceJobs is a job site for recruiting the top scientists in associations with the Journal of American Science. Registration not required.

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H-BLOX logo
Category: DNA alignment

H-BloX is a web-based JavaScript application that allows one to calculate and visualize the Shannon information or the relative entropy (Kullback-Leibler distance) of sequence alignment blocks. Various residue alphabets may be defined and useful modifications of the alignment block and the alphabet can be applied before calculation. Registration not required.

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