The GTEx Consortium adopts a strategy called expression quantitative trait loci (eQTL) mapping that allows the researchers to generate a comprehensive catalogue of associations between genetic variation and gene expression across many tissues in many individuals. The processed data are available in this website (see: Nat Genet. 2013 June ; 45(6): 580–585; Ward & Gilad Nature 550:190, 2017).
...continue to read
A major goal of the Encyclopedia of DNA Elements (ENCODE) is to annotate all functional elements of the human genome including protein-coding genes, pseudogenes, and non-coding transcribed loci and to catalog the products of transcription including splice isoforms and regulatory elements that control the cells and circumstances in which a gene is active.
...continue to read
The Expression Atlas provides information on gene expression patterns under different biological conditions such as a gene knock out, a plant treated with a compound, or in a particular organism part or cell. It includes both microarray and RNA-seq data. The data is re-analysed in-house to detect interesting expression patterns under the conditions of the original experiment. There are two components to the Expression Atlas, the Baseline Atlas and the Differential Atlas. The Baseline Atlas displ
...continue to read
GEO is a public functional genomics data repository supporting MIAME-compliant data submissions. Array- and sequence-based data are accepted. Tools are provided to help users query and download experiments and curated gene expression profiles.
...continue to read
The transcribed enhancer atlas holds ~40.000 enhancers that are detected by bidirectional capped transcription, using the FANTOM5 CAGE expression atlas encompassing 135 primary cell and 432 tissue samples from human (Andersson et al.Nature 507,455–461, 2014)
...continue to read
Ensembl, a genome browser project, produces genome databases for vertebrates, and makes this information freely available online.
...continue to read
GeneTests Web site is a publicly funded medical genetics information resource developed for physicians, other healthcare providers, and researchers, available at no cost to all interested persons.
...continue to read
GeneCards maintained by Weizmann Institute of Science is a searchable, integrated, database of human genes that provides concise genomic, transcriptomic, genetic, proteomic, functional and disease related information on all known and predicted human genes.
...continue to read
Add to my favorites
a public archive and repository where nucleotide sequences generated by next-generation sequencing methodologies can be submitted
Category: Gene information search
ENA (European Nucleotide Archive) operates as a public archive and repository where nucleotide sequences generated by next-generation sequencing methodologies can be submitted. Data can be searched interactively and programmatically using free text and sequence similiary search based queries. It is a useful utility also for patent data search.ENA
...continue to read
Add to my favorites
searchable collection of complete and incomplete large-scale sequencing, assembly, annotation, and mapping projects for cellular organisms
Category: Gene information search
The NCBI Entrez Genome Project database is intended to be a searchable collection of complete and incomplete (in-progress) large-scale sequencing, assembly, annotation, and mapping projects for cellular organisms. The database is organized into organism-specific overviews that function as portals from which all projects in the database pertaining to that organism can be browsed and retrieved (see Figure 1). For example, you will find all information regarding the human genome project on this pro
...continue to read
The Genome database (NCBI) provides views for a variety of genomes, complete chromosomes, sequence maps with contigs, and integrated genetic and physical maps. The database is organized in six major organism groups: Archaea, Bacteria, Eukaryotae, Viruses, Viroids, and Plasmids and includes complete chromosomes, organelles and plasmids as well as draft genome assemblies.
...continue to read
OMIM (Online Mendelian Inheritance in Man) is a compendium of human genes and genetic phenotypes. The full-text, referenced overviews in OMIM contain information on all known mendelian disorders and over 12,000 genes. OMIM focuses on the relationship between phenotype and genotype.
...continue to read
Add to my favorites
EMBL European Bioinformatic Istitute
Category: Gene information search, Protein informations
Biomedical search tools
Online genomic tools
Online proteomics tools
Calculators
Biomedical lab tools
Scientific writing/reading
Biomedical communities
Biomedical funding and jobs
Medical topics
Biomedical softwares