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BioImageXD logo
BioImageXD
Category: Imaging software
BioImageXD allows: Image analysis, Visualization, 3D

BioImageXD,written in Python and C++, is a free open source software project for analyzing, processing and visualizing of multi dimensional microscopy images.BioImageXD is a multi-purpose post-processing tool for bioimaging. The software can be used for simple visualization of multi-channel temporal image stacks to complex 3D rendering of multiple channels at once. Registration not required.

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SimuCell logo
SimuCell
Category: Imaging software
SimuCell allows: Visualization

SimuCell is an open-source framework for specifying and rendering realistic microscopy images containing diverse cell phenotypes, heterogeneous populations, microenvironmental dependencies and imaging artifacts. SimuCell can generate heterogeneous cellular populations composed of diverse cell types and allows users to specify interdependencies among population, biomarker and cell phenotypes (S. Rajaram et al., Nature Methods 9, 634, 2012). Registration not required.

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PhenoRipper logo
PhenoRipper
Category: Imaging software
PhenoRipper allows: Visualization

PhenoRipper is an open-source software tool designed for rapid exploration of high-content microscopy images that permits rapid and intuitive comparison of images obtained under different experimental conditions based on image phenotype similarity.PhenoRipper is designed to serve as an unsupervised exploratory tool for analysis of fluorescence microscopy images for both novices and experts. Registration not required.

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VAA3D logo
VAA3D
Category: Imaging software
VAA3D allows: Visualization, 3D, multidimensional, Image analysis

3D Visualization-Assisted Analysis (Vaa3D) is an open source cross-platform (Mac, Linux, and Windows) tool based on ITK libraries for visualizing large-scale (gigabytes, and 64-bit data) 3D image stacks and various surface data. It is also a container of powerful modules for 3D image analysis (cell segmentation, neuron tracing, brain registration, annotation, quantitative measurement and statistics, etc) and data management. Registration required.

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FluoRender logo
FluoRender
Category: Imaging software
FluoRender allows: Visualization, 3D, confocal

FluoRender is an interactive rendering tool for confocal microscopy data visualization. It combines the renderings of multi-channel volume data and polygon mesh data, where the properties of each dataset can be adjusted independently and quickly. The tool is designed especially for neurobiologists, and it helps them better visualize the fluorescent-stained confocal samples. Registration not required.

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Icy logo
Icy
Category: Imaging software
Icy allows: Image analysis, Visualization, 3D

Icy is a collaborative bioimage informatics platform that combines a community website for contributing and sharing tools and material, and software with a high-end visual programming framework for seamless development of sophisticated imaging workflows.It offers unique features for behavioral analysis, cell segmentation and cell tracking, Registration not required.

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OsiriX logo
OsiriX
Category: Imaging software
OsiriX allows: DICOM Images, Visualization

OsiriX is an open-source image processing software dedicated to DICOM images (".dcm" / ".DCM" extension) produced by imaging equipment (MRI, CT, PET, PET-CT, SPECT-CT, Ultrasounds, ...). It is available in 32-bit and 64-bit format and is fully compliant with the DICOM standard for image comunication and image file formats. OsiriX is at the same time a DICOM PACS workstation for imaging and an image processing software for medical research (radiology and nuclear imaging), functional imaging, 3D i... Registration not required.

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