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CISMM

Distributed trough GitHub

Category: Imaging software

CISMM allows: Image tools listing

CISMM is one of several groups providing visualization and analysis tools freely usable by the biomedical microscopy community. There are a number of freely-available tools from other National Research Resources and elsewhere. We list some of them here for easy reference, along with brief descriptions Registration not required.

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Human Frontier Science Program HFSP

Category: Biomedical funding and jobs

Subcategories: Fellowships

Postdoctoral Fellowships of Human Frontier Science Program HFSP are available for scientists who wish to work in foreign laboratories, with emphasis on individuals early in their careers who wish to obtain training in a different field of research. Fellows who return to their home countries are eligible to apply for a Career Development Award. Cross-disciplinary fellowships are intended for postdoctoral fellows with a Ph.D. degree in the physical sciences, chemistry, mathematics, engineering and computer sciences who wish to receive training in biology Registration not required.

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Human Metabolome Database

Category: Life science miscellaneous, Chemicals search

The Human Metabolome Database (HMDB) is a freely available electronic database containing detailed information about small molecule metabolites found in the human body. It is intended to be used for applications in metabolomics, clinical chemistry, biomarker discovery and general education. Registration not required.

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Random Integer Generator

Category: Statistical distribution

Subcategories: Random

This page allows you to generate random integers in a given interval.

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GLOBOCAN

Category: Cancer epidemiology

The aim of the GLOBOCAN project (developed by IARC) is to provide contemporary estimates of the incidence of, mortality, prevalence and disability-adjusted life years (DALYs) from major type of cancers, at national level, for 184 countries of the world. The GLOBOCAN estimates are presented separately for each sex and, for incidence and mortality data, for ten age groups. 1-, 3- and 5-year prevalence data are available for the adult population only (ages 15 and over). DALYs, life years lost lost due to premature mortality (YLLs) and years lived with disability (YLDs) are available for all ages only. Registration not required.

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ABSI calculator

calculate body shape Index

Category: Calculators and converters

The web site calculates the body shape index (ABSI). A body shape index that, by quantifying abdominal adiposity relative to BMI and height, is thought to be a better predictor of mortality than BMI (see Krakauer & Krakauer, PLoS ONE 7, e39504, 2012; Ahima & Lazar, Science 341:856, 2013). Registration not required.

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Contingency Table for Ordinal Categories

Category: Categorical data

Subcategories: StatPages

This screen computes several statistics from a table whose row and column categories form logically ordered sequences. It can accommodate a table with up to five rows and/or five columns Registration not required.

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HIV DataBase

Category: Model organisms

Subcategories: Virus

The HIV databases contain data on HIV genetic sequences, immunological epitopes, drug resistance-associated mutations, and vaccine trials. Registration not required.

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Good Calculators

Category: Calculators and converters

This website provides a variety of online calculators, such as math and physics, financial, statistics, engineering and conversion calculators Registration not required.

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Google scholar

Category: Literature search

Google Scholar allows users to search for digital or physical copies of articles, whether online or in libraries Google Scholar is relatively quick and easy to use. “Scholarly” searches will appear using the references from “’full-text journal articles, technical reports, preprints, theses, books, and other documents, including selected Web pages that are deemed to be “scholarly.’” Because most of Google Scholar's search results link directly to commercial journal articles, a majority of the time users will only be able to access a brief summary of the articles topics, as well as small amounts of important information regarding the article, and possibly have to pay a fee to access the entire article. Google Scholar is as easy to use as with the regular Google web search, especially with the helpfulness of the "advanced search" option, which can automatically narrow search results to a specific journal or article. The most relevant results for the searched keywords will be listed first, in order of the author's ranking, the number of references that are linked to it and their relevance to other scholarly literature, and the ranking of the publication that the journal appears in. Using its "group of" feature, it shows the available links to journal articles. In the 2005 version, this feature provided a link to both subscription-access versions of an article and to free full-text versions of articles; for most of 2006, it provided links to only the publishers' versions. Since December 2006, it has provided links to both published versions and major open access repositories, but still does not cover those posted on individual faculty web pages;[citation needed] access to such self-archived non-subscription versions is now provided by a link to Google, where one can find such open access articles. Through its "cited by" feature, Google Scholar provides access to abstracts of articles that have cited the article being viewed. It is this feature in particular that provides the citation indexing previously only found in Scopus and Web of Knowledge. Through its "Related articles" feature, Google Scholar presents a list of closely related articles, ranked primarily by how similar these articles are to the original result, but also taking into account the relevance of each paper. Registration not required.

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Online Medical Dictionary

Category: Dictionaries and writing aids

Description not available. Registration not required.

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ImageJ

Category: Imaging software

ImageJ allows: Image analysis

ImageJ from NIH is the most diffused public domain Java image processing program suitable for several scientific applications. Registration not required.

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Morpheus

Heat maps

Category: Other software, Gene expression

Morpheus (from Broad Institute) is a web-based versatile matrix visualization and analysis software. View your dataset as a heat map, and then explore the interactive tools in Morpheus. Cluster, create new annotations, search, filter, sort, display charts, and more. Registration not required.

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Galaxy

Category: DNA sequencing

Galaxy is an open source, web-based platform for data intensive biomedical research whose purpose is to make complex analysis more accessible. It is a useful tool for bioinformaticians and DNA sequencers. Galaxy provides a point-and-click web interface alternative to the bioinformatics command line, thus allowing researchers to easily create, run, and troubleshoot analytical pipelines (see Perkel JM, The Scientist 08/2016, p 57). Registration required.

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Nucleotide

Category: Gene information search

Subcategories: ncbi

The Nucleotide database (NCBI) is a collection of sequences from several sources, including GenBank, RefSeq, TPA and PDB. Genome, gene and transcript sequence data provide the foundation for biomedical research and discovery. Registration not required.

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MedlinePlus - Medical Encyclopedia

Category: Dictionaries and writing aids

The A.D.A.M. Medical Encyclopedia includes over 4,000 articles about diseases, tests, symptoms, injuries, and surgeries. It also contains an extensive library of medical photographs and illustrations. Registration not required.

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AddGene

Category: Others

Addgene is a non-profit plasmid repository dedicated to helping academic scientists around the world share high-quality plasmids. Registration not required.

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Random number calculators

Category: Statistics miscellanea, Statistical distribution

Subcategories: GraphPad

Randomly assign subjects to groups; Simulate data by generating random numbers; Randomly select a subset of subjects. Registration not required.

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Online Stat Book

Category: Other tutorials

Subcategories: Stat Tutorial

Online Statistics, an interactive multimedia course of study ideated by David Lnae of Rice University, is a resource for learning and teaching introductory statistics. It contains material presented in textbook format and as video presentations. This resource features interactive demonstrations and simulations, case studies, and an analysis lab. Registration not required.

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Random Number generator

Category: Statistics miscellanea, Statistical distribution

RANDOM.ORG offers true random numbers to anyone on the Internet. The randomness comes from atmospheric noise, which for many purposes is better than the pseudo-random number algorithms typically used in computer programs. Registration not required.

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