The Expression Atlas provides information on gene expression patterns under different biological conditions such as a gene knock out, a plant treated with a compound, or in a particular organism part or cell. It includes both microarray and RNA-seq data. The data is re-analysed in-house to detect interesting expression patterns under the conditions of the original experiment. There are two components to the Expression Atlas, the Baseline Atlas and the Differential Atlas. The Baseline Atlas displ... Registration not required.
Click here for more informationsChEMBL, an open-access database, contains more than 5 million interactions between proteins and ligands that have been published in peer-reviewed journals or reported by laboratories and screening centers . Under ChEMBL’s “Ligand Search” tab, you can enter a compound’s SMILES notation in the “List Search” box and click “Fetch Compounds.” On the next page, clicking on the ChEMBL compound identifier under the 2-D drawing takes you to the Compound Report Card page, which includes th... Registration not required.
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Category: PhD programs and Masters
Subcategories: PhD program , EMBL
The EMBL International PhD Programme, originally established in 1983, represents the flagship of EMBL's commitment to first class training and education. Registration not required.
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a public archive and repository where nucleotide sequences generated by next-generation sequencing methodologies can be submitted
Category: Gene information search
Subcategories: EMBL
ENA (European Nucleotide Archive) operates as a public archive and repository where nucleotide sequences generated by next-generation sequencing methodologies can be submitted. Data can be searched interactively and programmatically using free text and sequence similiary search based queries. It is a useful utility also for patent data search.ENA Registration not required.
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EMBL European Bioinformatic Istitute
Category: Gene information search, Protein informations
Subcategories: EMBL
EBI (EMBL European Bioinformatic Istitute) home page provides a central access point to search several databases for information on genes, proteins, enzymes etc. Registration not required.
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Category: DNA microarray data analysis
Subcategories: EMBL
The ArrayExpress Archive (EMBL-EBI) is a database of functional genomics experiments including gene expression where you can query and download data collected to MIAME and MINSEQE standards. Registration not required.
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Category: Protein informations, Protein interactions
Subcategories: EMBL
STITCH is a resource to explore known and predicted interactions of chemicals and proteins. Chemicals are linked to other chemicals and proteins by evidence derived from experiments, databases and the literature. Registration not required.
Click here for more informationsThe genome-wide association study (GWAS) publications listed in this catalog establish genetic associations between hundreds of genomic loci and complex (multigenic)traits, many of them diseases. Only those attempting to assay at least 100,000 single nucleotide polymorphisms (SNPs) in the initial stage, are included here. Registration not required.
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Peptidase Database
Category: Protein informations
Subcategories: EMBL
The MEROPS database is an information resource for peptidases (also termed proteases, proteinases and proteolytic enzymes) and the proteins that inhibit them. Registration not required.
Click here for more informationsPDBsum provides an at-a-glance overview of every macromolecular structure deposited in the Protein Data Bank (PDB), giving schematic diagrams of the molecules in each structure and of the interactions between them.
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Category: DNA alignment, Sequencing and assembly software
Subcategories: EMBL
ClustalW2 is a general purpose multiple sequence alignment program for DNA or proteins. The online version is hosted by EMBL. It produces biologically meaningful multiple sequence alignments of divergent sequences. It calculates the best match for the selected sequences, and lines them up so that the identities, similarities and differences can be seen. Registration not required.
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Pairwise Sequence Alignment
Category: DNA sequencing
Subcategories: EMBL