NOVELTIES
The Genome database (NCBI) provides views for a variety of genomes, complete chromosomes, sequence maps with contigs, and integrated genetic and physical maps. The database is organized in six major organism groups: Archaea, Bacteria, Eukaryotae, Viruses, Viroids, and Plasmids and includes complete chromosomes, organelles and plasmids as well as draft genome assemblies. Registration not required.
Click here for more informationsPublished on 2012-05-04 15:16:40
OMIM (Online Mendelian Inheritance in Man) is a compendium of human genes and genetic phenotypes. The full-text, referenced overviews in OMIM contain information on all known mendelian disorders and over 12,000 genes. OMIM focuses on the relationship between phenotype and genotype. Registration not required.
Click here for more informationsPublished on 2012-05-04 15:06:58
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EMBL European Bioinformatic Istitute
Category: Gene information search, Protein informations
EBI (EMBL European Bioinformatic Istitute) home page provides a central access point to search several databases for information on genes, proteins, enzymes etc. Registration not required.
Click here for more informationsPublished on 2012-05-04 15:06:14
The Genome Data Viewer, NCBI genome browser, allows you to view and search an organism's complete genome, display chromosome maps, and zoom into progressively greater levels of detail, down to the sequence data for a region of interest. Registration not required.
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A chemogenomics resource for neglected tropical diseases. Database includes extensive genetic, biochemical and pharmacological data related to tropical disease pathogens and computationally predicted druggability for potential targets and compound desirability Registration not required.
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The DrugBank database contains extensive data on the nomenclature, ontology, chemistry, structure, function, action, pharmacology, pharmacokinetics, metabolism and pharmaceutical properties of both small molecule and large molecule (biotech) drugs. It also contains comprehensive information on the target diseases, proteins, genes and organisms on which these drugs act. Registration not required.
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Orphanet is a database of information on rare diseases and orphan drugs for all publics. Its aim is to contribute to the improvement of the diagnosis, care and treatment of patients with rare diseases. Orphanet includes a Professional Encyclopaedia, which is expert-authored and peer-reviewed, a Patient Encyclopaedia and a Directory of expert Services. This Directory includes information on relevant clinics, clinical laboratories, research activities and patient organisations. Registration not required.
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A database that collects, encodes and makes accessible current data on human genetic variation effect on drug response, gene–drug–disease relationships (literature curation), key genes and drug pathways. The database also contains drugs with annotations related to some pharmacokinetic properties. Registration not required.
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Daily Med (from NIH) provides high quality information about marketed drugs. Registration not required.
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Gene SNP is part of the Environmental Genome Project (from NIESH) web resource that integrates gene, sequence and polymorphism data into individually annotated gene models. The human genes included are related to DNA repair, cell cycle control, cell signaling, cell division, homeostasis and metabolism, and are thought to play a role in susceptibility to environmental exposure. Registration not required.
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dbSNP contains human single nucleotide variations, microsatellites, and small-scale insertions and deletions along with publication, population frequency, molecular consequence, and genomic and RefSeq mapping information for both common variations and clinical mutations. Registration not required.
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LOVD provides a flexible, freely available tool for Gene-centered collection and display of DNA variations.A flexible, freely available tool for genomic variant and phenotype collection, display and curation. LOVD allows both patient-centered and gene-centered views. Registration not required.
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SRA stores raw sequencing data from the next generation of sequencing platforms including Roche 454 GS System®, Illumina Genome Analyzer®, Applied Biosystems SOLiD® System, Helicos Heliscope®, Complete Genomics®, and others Registration not required.
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A free extensible and customizable gene annotation portal, a complete resource for learning about gene and protein function (see Wu et al., Genome Biol 10, R130, 2009.) Registration not required.
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The commercial company Jackson Laboratory JAX® Mice contains the most published and well characterized mouse models in the world. Registration not required.
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Gypsy Database (GyDB) is an open editable database devoted to the evolutionary dynamics of viruses and transposable elements based on their phylogenetic classification (Llorens et al., Nucleic Acids Res 39:D70, 2011). Registration not required.
Click here for more informationsPublished on 2012-04-29 13:28:03
The Nucleotide database (NCBI) is a collection of sequences from several sources, including GenBank, RefSeq, TPA and PDB. Genome, gene and transcript sequence data provide the foundation for biomedical research and discovery. Registration not required.
Click here for more informationsPublished on 2012-04-29 13:27:22
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known and predicted protein interactions
Category: Protein interactions
STRING allows: database of known protein interactions, predict protein interactions
STRING is a database of known and predicted protein interactions. The interactions include direct (physical) and indirect (functional) associations. They are derived from Genomic Context, High-throughput Experiments (Conserved), Coexpression, Previous Knowledge. STRING quantitatively integrates interaction data from these sources for a large number of organisms, and transfers information between these organisms where applicable. The database currently covers 2,590,259 proteins from 630 organisms. Registration not required.
Click here for more informationsPublished on 2012-04-29 08:58:16
The non-profit ATCC (American Type Culture Collection) Cell Products is the most comprehensive and diverse of its kind in the world, consisting of over 3,600 cell lines from over 150 different species. It holds over 950 cancer cell lines, 1,000 hybridomas and several special collections including stem cells. Registration not required.
Click here for more informationsPublished on 2012-04-29 08:56:26
The Cochrane Collaboration is an international, non-profit, independent organisation, established to ensure that up-to-date, accurate information about the effects of healthcare interventions is readily available worldwide. It produces and disseminates systematic reviews of healthcare interventions, and promotes the search for evidence in the form of clinical trials and other studies of the effects of interventions. Registration not required.
Click here for more informationsPublished on 2012-04-29 05:30:50
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