NOVELTIES
The Nucleotide database (NCBI) is a collection of sequences from several sources, including GenBank, RefSeq, TPA and PDB. Genome, gene and transcript sequence data provide the foundation for biomedical research and discovery. Registration not required.
Click here for more informationsPublished on 2012-04-29 13:27:22
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known and predicted protein interactions
Category: Protein interactions
STRING allows: database of known protein interactions, predict protein interactions
STRING is a database of known and predicted protein interactions. The interactions include direct (physical) and indirect (functional) associations. They are derived from Genomic Context, High-throughput Experiments (Conserved), Coexpression, Previous Knowledge. STRING quantitatively integrates interaction data from these sources for a large number of organisms, and transfers information between these organisms where applicable. The database currently covers 2,590,259 proteins from 630 organisms. Registration not required.
Click here for more informationsPublished on 2012-04-29 08:58:16
The non-profit ATCC (American Type Culture Collection) Cell Products is the most comprehensive and diverse of its kind in the world, consisting of over 3,600 cell lines from over 150 different species. It holds over 950 cancer cell lines, 1,000 hybridomas and several special collections including stem cells. Registration not required.
Click here for more informationsPublished on 2012-04-29 08:56:26
The Cochrane Collaboration is an international, non-profit, independent organisation, established to ensure that up-to-date, accurate information about the effects of healthcare interventions is readily available worldwide. It produces and disseminates systematic reviews of healthcare interventions, and promotes the search for evidence in the form of clinical trials and other studies of the effects of interventions. Registration not required.
Click here for more informationsPublished on 2012-04-29 05:30:50
Naturejobs is in association with Nature magazine. It is a worldwide career resource for scientists, providing a wide range of career advice and information. Registration not required.
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The ArrayExpress Archive (EMBL-EBI) is a database of functional genomics experiments including gene expression where you can query and download data collected to MIAME and MINSEQE standards. Registration not required.
Click here for more informationsPublished on 2012-04-29 05:25:54
Babelomics is an integrative platform for the analysis of transcriptomics, proteomics and genomic data with advanced functional profiling. This new version of Babelomics integrates primary (normalization, calls, etc.) and secondary (signatures, predictors, associations, TDTs, clustering, etc.) analysis tools within an environment that allows relating genomic data and/or interpreting them by means of different functional enrichment or gene set methods. Such interpretation is made not only using functional definitions (GO, KEGG, Biocarta, etc.) but also regulatory information (from Transfac, Jaspar, etc.) and other levels of regulation such as miRNA-mediated interference, protein-protein interactions, text-mining module definitions and the possibility of producing de novo annotations through the Blast2GO system . Registration not required.
Click here for more informationsPublished on 2012-04-29 05:25:01
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commercially available antibodies for research purposes
Category: Biomedical products search
AbMiner (NIH) is a tool that allows users to search for appropriate, commercially available antibodies for research purposes, and to match each antibody to its respective genomic identifiers. The unique feature of this anitibody collection is that all antibodies are screened by Western blot and the results are provided in AbMiner. The sample used for antibody screening was a pool of the NCI-60 cancer cell lines, comprised of 60 different cell lines from 9 different tissues of origin (more info?). Besides results, AbMiner also includes the diluitons used and pertinent vendor information for all antibodies. The target antigen for each antibody was translated to the encoding gene symbol using MatchMiner. Other identifiers include gene name, HUGO status, UniGene Cluster ID, RefSeq for protein and mRNA, and Entrez Gene Ids. We will update these identifiers periodically as new information becomes available. Users can search AbMIner by any of the identifiers and easily navigate between antibody, protein, mRNA, and gene. Registration not required.
Click here for more informationsPublished on 2012-04-29 00:33:34
The Antibody Resource Page is a guide designed by scientists for scientists to find companies that sell custom monoclonal, polyclonal, and catalogue antibodies. Registration not required.
Click here for more informationsPublished on 2012-04-29 00:32:13
Access to high quality, well characterized, affordable affinity reagents has been deemed a major hurdle in cancer research by representatives of the scientific community. The reagents program within CPTC provides tools, reagents, technologies, and reference materials to allow for peptide and protein analysis for a variety of platforms and applications. The reagents generated within the CPTC program include cancer-related monoclonal antibodies and hybridomas, reference materials, standards kits and MRM peptides. Registration not required.
Click here for more informationsPublished on 2012-04-29 00:31:28
Search antibodies, siRNA/shRNA, ELISA, cDNA clones, proteins/peptides, microRNA, and biochemicals from all suppliers Registration not required.
Click here for more informationsPublished on 2012-04-29 00:29:10
LabX has evolved as a highly specialized business-to-business marketplace where scientific equipment and supplies can be bought and sold. It provide a means for buyers and sellers to connect. Professionals from all industries visit LabX to buy and sell equipment and supplies. While 85% of customers are from North America, LabX enjoys a worldwide user base that includes Europe, Asia, Central and South America, and Australia. Registration not required.
Click here for more informationsPublished on 2012-04-29 00:27:08
R is a free software environment for statistical computing and graphics. It compiles and runs on a wide variety of UNIX platforms, Windows and MacOS Registration not required.
Click here for more informationsPublished on 2012-04-28 15:08:44
The Gene Expression Omnibus (GEO - NCBI) is a public repository archiving and freely distributing microarray, next-generation sequencing, and other forms of high-throughput functional genomic data submitted by the scientific community. In addition to data storage, a collection of web-based interfaces and applications are available to help users query and download the experiments and gene expression patterns stored in GEO. Registration not required.
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WikiPathways is an open, public platform dedicated to the curation of biological pathways by and for the scientific community Registration not required.
Click here for more informationsPublished on 2012-04-28 10:15:07
BASE is a comprehensive free web-based database solution for the massive amounts of data generated by microarray analysis. Registration not required.
Click here for more informationsPublished on 2012-04-28 10:12:21
The Human Metabolome Database (HMDB) is a freely available electronic database containing detailed information about small molecule metabolites found in the human body. It is intended to be used for applications in metabolomics, clinical chemistry, biomarker discovery and general education. Registration not required.
Click here for more informationsPublished on 2012-04-28 10:11:06
Gene (NCBI) is a searchable database of genes, from RefSeq genomes, and defined by sequence and/or located in the NCBI Map Viewer Registration not required.
Click here for more informationsPublished on 2012-04-28 10:03:06
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analysis of transcription factor binding sites
Category: Transcription factors analysis
DiRE (Distant Regulatory Elements of co-regulated genes) uses gene co-expression data, comparative genomics, and combinatorics of transcription factor binding sites (TFBSs) to find TFBS-association signatures that can be used for discriminating specific regulatory functions. DiRE's unique feature is the detection of REs outside of proximal promoter regions, as it takes advantage of the full gene locus to conduct the search. DiRE can predict common REs for any set of input genes for which the user has prior knowledge of co-expression, co-function, or other biologically meaningful grouping. The server predicts function-specific REs consisting of clusters of specifically-associated TFBSs, and it also scores the association of individual TFs with the biological function shared by the group of input genes. Its integration with the Array2BIO server allows users to start their analysis with raw microarray expression data. Registration not required.
Click here for more informationsPublished on 2012-04-28 10:00:27
The Integrated Genomics Viewer (IGV) is a high-performance visualization tool for interactive exploration of large, integrated datasets. It supports a wide variety of data types including sequence alignments, microarrays, and genomic annotations. Registration required.
Click here for more informationsPublished on 2012-04-24 12:20:47
Biomedical search tools
Online genomic tools
Online proteomics tools
Calculators
Biomedical lab tools
Scientific writing/reading
Biomedical communities
Biomedical funding and jobs
Medical topics
Biomedical softwares