NOVELTIES
The EST database (NCBI) is a collection of short single-read transcript sequences from GenBank. These sequences provide a resource to evaluate gene expression, find potential variation, and annotate genes. Registration not required.
Click here for more informationsPublished on 2011-05-01 13:36:27
HomoloGene (NCBI) is a system for automated detection of homologs among the annotated genes of several completely sequenced eukaryotic genomes. Registration not required.
Click here for more informationsPublished on 2011-05-01 13:29:26
The DNV database (dbDNV) has been established to promote more accurate variation annotation. Aside from the flat file download, users can explore the gene-related duplications and the associated DNVs by DGL and DNV searches, respectively Registration not required.
Click here for more informationsPublished on 2011-05-01 06:10:55
By extensive analyses of all human transcripts, H-InvDB (Integrated DB of Annotated Human Genes) provides curated annotations of human genes and transcripts that include gene structures, alternative splicing isoforms, non-coding functional RNAs, protein functions, functional domains, sub-cellular localizations, metabolic pathways, protein 3D structure, genetic polymorphisms (SNPs, indels and microsatellite repeats) , relation with diseases, gene expression profiling, and molecular evolutionary features , protein-protein interactions (PPIs) and gene families/groups. Registration not required.
Click here for more informationsPublished on 2011-05-01 05:59:01
HERVd (Human Endogenous Retrovirus DB) is a database compiled from the human genome nucleotide sequences obtained mostly in the Human Genome Projects. It is a relatively simple and fast environment for screening human genome for endogenous retrovirus. Registration not required.
Click here for more informationsPublished on 2011-05-01 05:13:37
PhosphoSitePlus® (PSP) is an online systems biology resource providing comprehensive information and tools for the study of protein post-translational modifications (PTMs). In addition to providing an extensive, manually curated phosphorylation site database, other commonly studied PTMs are included in PSP. Registration not required.
Click here for more informationsPublished on 2011-04-27 04:09:49
The XCMS software for metatabolomic and lipidomic reads and processes LC/MS data stored in netcdf , mzXML, mzData and mzML files. It provides methods for feature detection, non-linear retention time alignment, visualization, relative quantization and statistics. XCMS is capable of simultaneously preprocessing, analyzing, and visualizing the raw data from hundreds of samples. Registration not required.
Click here for more informationsPublished on 2011-04-26 08:07:05
KEGG Pathway is a collection of manually drawn pathway maps (see new maps, change history, and last updates) representing our knowledge on the molecular interaction and reaction networks. Pathway entries are text representation of pathway maps, containing descriptions (for a limited number of entries, at the moment). KEGG PATHWAY mapping is the process to map molecular datasets, especially large-scale datasets in genomics, transcriptomics, proteomics, and metabolomics, to the KEGG pathway maps for biological interpretaion of higher-level systemic functions. Registration not required.
Click here for more informationsPublished on 2011-04-16 23:53:12
The ProMAT (Protein Microarray Analysis Tool) is a data analysis application for protein microarray data. The software was developed for use with ELISA microarray experimental data by the Statistics Group and the Cell Biology and Biochemistry Group at Pacific Northwest National Laboratory. Registration required.
Click here for more informationsPublished on 2011-04-15 14:46:35
MeSH is the U.S. National Library of Medicine's controlled vocabulary used for indexing articles for MEDLINE/PubMed. MeSH terminology provides a consistent way to retrieve information that may use different terminology for the same concepts. Use the MeSH database to find Medical Subject Heading Terms and build a search strategy. Registration not required.
Click here for more informationsPublished on 2011-04-15 14:34:10
Free online Acronyms and Abbreviations Dictionary. Quickly define the meaning for all acronyms and abbreviations Registration not required.
Click here for more informationsPublished on 2011-03-28 13:02:19
The site is organized around key concepts, explained by: animation, image gallery, video interviews, problems, biographies, and links. There are three main sections: Classical Genetics, Molecular Genetics, Genetic Organization & Control. Registration not required.
Click here for more informationsPublished on 2011-03-25 12:30:37
Various proteomic software Registration not required.
Click here for more informationsPublished on 2011-03-24 15:31:54
Lab Security and Basic Lab Techniques Registration not required.
Click here for more informationsPublished on 2011-03-24 03:13:59
miRDB is an online database for miRNA target prediction and functional annotations in animals. All the targets were predicted by a new bioinformatics tool, which was developed by analyzing thousands of genes impacted by miRNAs with an SVM learning machine. Common features associated with miRNA target binding have been identified and used to predict miRNA targets. miRDB hosts predicted miRNA targets in five species: human, mouse, rat, dog and chicken. Registration not required.
Click here for more informationsPublished on 2011-03-24 02:58:52
The web pages listed here comprise a powerful, conveniently-accessible, multi-platform statistical software package. There are also links to online statistics books, tutorials, downloadable software, and related resources. Registration required.
Click here for more informationsPublished on 2011-03-24 02:54:26
Primer3 Plus is the new improved web interface to the popular Primer3 primer design program. Registration not required.
Click here for more informationsPublished on 2011-03-23 18:40:12
CalSpec is a software module for fast processing of mass spectrometric data in 13C Metabolic Flux Analysis(MFA). protocols
Click here for more informationsPublished on 2011-03-23 17:45:24
The miRBase database is a searchable database of published miRNA sequences and annotation. Each entry in the miRBase Sequence database represents a predicted hairpin portion of a miRNA transcript (termed mir in the database), with information on the location and sequence of the mature miRNA sequence (termed miR). Both hairpin and mature sequences are available for searching and browsing, and entries can also be retrieved by name, keyword, references and annotation. All sequence and annotation data are also available for download. Registration not required.
Click here for more informationsPublished on 2011-03-20 10:25:11
TFBIND for online searching transcription factor binding sites (including TATA boxes, GC boxes, CCAAT boxes, transcription start sites (TSS)). This tool uses weight matrix in transcription factor database TRANSFAC R.3.4 developed by Dr. Wingender et al, and the cut-offs originally estimated by our research. Registration not required.
Click here for more informationsPublished on 2011-03-20 10:23:23
Biomedical search tools
Online genomic tools
Online proteomics tools
Calculators
Biomedical lab tools
Scientific writing/reading
Biomedical communities
Biomedical funding and jobs
Medical topics
Biomedical softwares